Overview of Carotenoid Pathway Genetic Manipulation
This lecture focuses on metabolic engineering approaches applied to the carotenoid biosynthesis pathway aiming to increase provitamin A content in staple crops. Two case studies are covered:
- Zeaxanthin-rich genetically engineered potato
- Provitamin A-enhanced tomato
These studies demonstrate the potential of genetic engineering to improve nutritional quality through pathway modulation.
Case Study 1: Zeaxanthin-Rich Potato
Background
- Carotenoids like alpha-carotene, beta-carotene, and zeaxanthin originate from lycopene.
- In wild-type potatoes, carotenoid content mainly consists of lutein and low zeaxanthin.
Genetic Engineering Strategy
- Target gene: Zeaxanthin epoxidase (ZEP) from potato.
- Two approaches:
- Overexpression: Additional ZEP gene copies inserted.
- Antisense suppression: Using antisense RNA to suppress ZEP activity.
Outcomes
- Both approaches resulted in co-suppression, unexpectedly shutting down ZEP activity.
- Resulted in 4- to 130-fold increase in zeaxanthin accumulation.
- Total carotenoid content increased up to 5.7-fold over controls.
- Lutein content decreased in some transgenic lines.
- Alpha-tocopherol (vitamin E) content increased 2- to 3-fold, possibly due to enhanced flux in the methylerythritol phosphate (MEP) pathway related to carotenoid biosynthesis.
Mechanistic Insights
- Enhanced zeaxanthin accumulation likely diverts metabolic flux, impacting the production of related compounds like vitamin E.
- The increase in alpha-tocopherol may be linked to increased GGPP (geranylgeranyl pyrophosphate) availability, a shared precursor.
For a complementary understanding of metabolic reprogramming techniques that enable such modifications, see Metabolic Reprogramming in Catharanthus Roseus for Non-Natural Indole Alkaloids.
Case Study 2: Improving Provitamin A Content in Tomato
Background
- Lycopene is the dominant carotenoid in tomatoes, serving as a potent antioxidant.
- Enhancing beta-carotene (a provitamin A compound) content is a nutritional goal.
UK Group Approach
- Introduced bacterial crtI gene encoding phytoene desaturase to convert phytoene directly to lycopene.
- Employed strong constitutive promoters and transit peptides to target plastids.
Unexpected Results
- Instead of accumulating lycopene, transgenic tomatoes accumulated higher beta-carotene levels.
- This was attributed to endogenous lycopene beta-cyclase activity converting lycopene to beta-carotene.
Italian Group Approach
- Two constructs used:
- Overexpression (OE): Arabidopsis lycopene beta-cyclase gene driven by a fruit-specific promoter to increase conversion of lycopene to beta-carotene.
- Antisense suppression: Tomato lycopene beta-cyclase gene in antisense orientation to reduce conversion and increase lycopene.
Outcomes
- OE plants produced orange-colored fruit due to increased beta-carotene content.
- Antisense plants showed deeper red fruit indicating higher lycopene levels.
- Total carotenoid content increased in OE plants (up to 112 μg/g fresh weight vs. 66 in control).
- Antisense fruits had reduced carotenoids compared to controls.
This intricate manipulation of biochemical pathways aligns with strategies detailed in Metabolic Engineering of Indole Alkaloid Biosynthesis: Case Studies in Plants and Yeast, demonstrating how genetic tools rewire metabolism for enhanced compound production.
Key Takeaways
- Targeted genetic manipulation of carotenoid biosynthetic genes can significantly alter carotenoid profiles and enhance nutritional quality.
- Both overexpression and antisense suppression can be effective but may yield unexpected results due to endogenous enzyme activities.
- Use of tissue-specific promoters and transit peptides is critical for optimal gene expression and protein targeting.
- Modulation of carotenoid pathways may have secondary effects on related pathways, such as vitamin E biosynthesis.
These findings highlight how metabolic engineering principles from alkaloid pathways can be broadly applied, as reviewed in Metabolic Engineering Enhances Alkaloid Production in Catharanthus Roseus Hairy Roots.
References
- RAR et al., Metabolic Engineering, 2002, Vol. 4, pp. 263–272: Zeaxanthin-rich potato metabolic engineering.
- Nature Biotechnology, 2000: UK group study on bacterial crtI gene and tomato beta-carotene increase.
- Plant Journal, 2000, Vol. 24, pp. 413–419: Italian group lycopene beta-cyclase overexpression and antisense suppression in tomato.
This lecture underscores the complexity and promise of metabolic engineering in enhancing provitamin A and other carotenoid compounds in important food crops, contributing toward improved human nutrition and health.
[Music] [Music] welcome to online nptl certification
course on pharmacognosy and metabolic engineering well now go to lecture number 43 where I will discuss about uh
carotenoid pathway genetic manipulation that means metabolic engineering of carotenoid
pathway so here I will cover two case studies one is basically genetic engineering for gazan thin Rich
potato and second one is about improving Prov vitamin A content in tomato so let let us go to the board
now so genetic engineering for for zanin
Rich potato so how the strategy so they used the Gen which
is zantin epoxides z e which is janin epoxides I have mentioned in the last class and
they have used two strategies one is basically by over
expression and another one is by anti sense expression or anti sense suppression anti sense
inactivation well so uh and the gene s was potato itself so
the gene Source potato Z
something uh so to show you the pathway once again for a brief
revision is this that lopin lopin makes
Alpha carotin and beta
carotin and from beta carotin zanthin is produced okay and
zanin in The Next Step converted into into ananin and
then V so and th s
Thea and then y okay and then it may move to Neo zanthin so in the while type
potato while andin accumulation
is pretty prevalent and in the wild Ty potato you will also
find Litin so this is what happened in the normal wild type
potato so while type okay
so the step what uh they have decided is basically this
step which is this ZD which converts Zan 2 and th
Zin and Anan to ventin so this also I have shown in the
last class that there are two successive epoxidation is required leading to formation of Vos zanthin so
the strategy one is basically overe expression that means the Gene simply extra copy was
overexpressed and the outcome of such OV
expression led to the phenomenon which is called
cotion that means the additional copy inserted into the uh plan genome and it express that eventually leads to the
shutdown of the zanthin epoxides activity so which is called Co oppression so extra copies
hutting down so the co supression term was used uh nowadays it is not using much but the paper basically it is
published in the year 2002 so that was the time when this RNA interference mechanism was not fully
iated so this paper was published in the Journal called metabolic
engineering uh in the year of2 volume 4 page number 263 to 272 the first author is RAR r m
RAR from German laboratory okay so this leads to co operation Co
operation means the no Viola
zanthin production in the transgenic plants
whereas in case of antisense Separation that is straightforward because there it is the strategy is
clear basically you want to shut down that and as a result of that here also same thing will happen
that no banthin or in other words the V banthin
amount was diminished drastically okay
and maybe little bit of ananin accumulated but bolog total gone but as a result of that what happened in both
the cases that uh this leading to the formation of
more more Zan so that means when you are blocking this by anti sense or try to make OV
expression both leads to basically shut down of this pathway leading to more accumulation of
zanthin so the level of Zan level
increased from 4 to 130 fold depends on the uh expression level
okay another point is that when higher zanin level was found that also Al showed that increase in the total
carotinoid content so the next point is this that increase in
the total carotenoid content was
noticed and uh this increase up to 5.7 ft as compared to the
control and also what they have found that in in few lines uh reduced amount
of Litin was also found D amount of lutin was also detected this much is fine so that means
that when you try to block here what happens that anyway as a result of that what expression it it led to co
oppression as a result of antisense it's basically it blocked the uh enzyme so Zan in both the cases Gan amount
enhanced as a result of this enhancement so so what they have noticed that the total carotin and contents also enhanced
but the Litin amount was got uh reduced in in particularly in fuel lines but and the another interesting observation
although it is difficult to correlate but I'll try to uh make a correlation that there will be they also found two
two threefold increase uh concom
tant 2 to 3old increase
in Alpha too this is O
feral which is vitamin E content in the transgenic plants
so now why how can we correlate with this too feral increase so let me try to explain because Toof feral is not here
in this picture but what they found as a result of this separation the too feral content increased let us see that so uh
too feral normally produced from map pathway so I just briefly tell you the origin of too
feral so one say one is the Sate
pathway which supplies tyos and another one is
the map pathway and this pathway is basically contributing to the formation of
chlorophyll as well so here if I write briefly loril
and of FTI tail is there p h y Ty y Lyle pyrophosphate is produced so from tyrosin what happens
that it produces the homo gentisic acid homogentisic acid
ho what is called hga
so homogenic acid and fle tail they joins together and forms the tocoferol which is vitamin
E and the relationship is this that map pathway also contributes towards the formation
of kerotin prots
including Pro vitamin a which is beta
carotin so the relation is bit very distant but what happens that uh uh and the
fle pyop phosphate is basically it is produced if I show it to you that it is basically coming from
ggpp so M pathway this
is uh coming from and is a GG reduct is enzyme plays a
role and uh so so the relation is this that when the total carotin content
enhanced uh what we found as a result of this antisense separation I don't I me the point is
this that enhancement perhaps drives the map pathway the flow of the M pathway flux
more towards this pathway and it is possible that as map pathway is more active so perhaps that leads to more
formation of this uh okay I made a one small mistake so uh this gpp reductors will be here uh
more GG reductors it is here so more formation of ggpp so ggpp when there is
more formation of ggpp because ggpp takes part in the CARiD formation so some amount of ggpp is basically
channelized towards the formation of uh this too feral through this file tail so uh right
ggp like this way so we can modify the pathway a little bit more uh instead I take this
out so this is basically the origin of tocoferol and its relationship with the carotenoid pathway uh although this was
not discussed in that detail in the paper but uh as a scientist we need to understand that why this happens so this
may be the explanation for this now with this I move into the another case stud that is
uh improving Prov vitamin A content in tomato content in tomato now we all know that tomato
basically accumulates lopine and lopine is basically a very
strong antioxidant so there is always a need for accumulating more lopine in the
pathway so how like like how lopine is formed although I have discussed so I just make a simplified pathway I not
showing all the details so lopine is basically formed from uh this uh jeta
carotin and that is coming from phin and what I have also mentioned in
the earlier class that this is phyto in De saturas and this is called gartin
desaturase so these are the two plant enzymes which involve in the formation of
lopine and so the uh the the work what I am going to discuss now
basically uh there are two group which contributed in this uh Improvement one group is from UK
group and the second group was from the Italy group so you UK group originally aimed
for making more lopine in tomato and what they have done actually they have
used a bacterial Gene which basically makes lopine from phyto in one
step this is called
CRT I uh carotin isaris
okay so the this is basically from The heterologous Source uh I will not talk more about this here when I'll talk
another case studies I'll will talk there so this is basically the bacterial Gene so
the hetus source so the constructs what they have
made is B basically they made a simple construct that means
the C and in between they put
a Transit peptide and this is of course they put the antibiotic resistance marker gen and all other
things and which I'm not putting they use the agrobacterium
[Music] Tums as a vehicle to transfer this Gene in tomato
now uh a promoter was used this promoter was an constitutive promoter so throughout the plant the Gen is
expressed and Terminator is there so that the transcription will stop there and why TP because uh this is okay
a heterologous gene source and you are putting inserting this gene into the genome but eventually as I have
mentioned that the pathway carotin pathway is basically operating in the plasti chromoplast eventually it forms a
chromoplast so the transit peptide is required to drive the translation product into the plastid where it is
expected that this enzyme will get the appropriate substrate and run the pathway so that is why this they have
put it now what happened as a result of that what they expected that when they have put this CTI under the control of a
very strong promoter uh uh so it should work and Def yes it has worked and it should make lopine but what
happened here that when they try to analyze they found that it is not the lopin but the the
pathway moves ahead and produces beta carotin
okay so that is unexpected result and beta as beta carotin is basically the uh the precursor
of vitamin A so that is unexpected but in interesting result but why it happened
that is the question the the gene should the gene function led to the formation of lopine
yes it it achieved but lopine subsequently converted into beta carotin this is part of happens because of the
presence of endogenous genes which is called beta lcy which I have also discussed in the next class so more
lopine in the cell allows the endo enous beta cyclist to function and it converts this to this so this this was unexpected
result and this paper was published in uh nature biotechnology in the year uh 2000 it's phical in the June
issue okay anyway the result was unexpected but the result was interesting and it has direct bearing on
the health issues and that is why the paper goes to uh nature biotechnology now let us see what Italian group
attempted to do Italian group is the job was uh pretty straightforward what the uh attempted they have made
basically two constructs one is the over expression construct or OE
construct so the over EXT expression construct is basically they have taken again uh a
heterologous gene but it is from the plant Source only so they have taken arabidopsis uh beta Cycles gen Arab of
CIS LC y this gen they have taken and they express it under the control of a promoter and
Terminator so here they need to they also need to add a Transit peptide because eventually it
should be driven into the uh plased and but the promoter what they have used
they have used a uh organ specific promoter or which is called tomato PDS
promoter tomato PDS fatures promoter it is tomato PL specific
promoter and whereas here it is basically the c m 35s promoter which is a constitutive promoter in the other
case okay and then uh and they have transformed uh tomato plant using this construct and
the the other construct which was basically an anti sense construct or as construct so the antisense construct
here they have used the Tomato Gene itself so the Gen
was Tom beta LC y lopin beta Cycles
whatever and then uh Terminator to be added here and then a Transit pate
and the promoter promoter was same Tom PDS promoter and the transit peptide also I
need to show it here which is TP and you have to put this but one important thing uh what we
need to show in both the cases in OV expression construct you have to put the direction
this this direction in this way whereas here you have to put it in this direction so that is why it is anti
sense so in a reverse way so that means here what happens that the three
prime portion of the Tomato beta Cycles DNA was cloned in anti sense orientation so anti
sense orientation under the control of the same promoter now what what you expect
that they all have done the manipulation uh with this step particularly so in case of OV expression
what is going to happen that uh so the Tom eventually we should see the fruit so the Tomato when if it is lopine
Rich then it should be red in color
but uh when you put the arabidopsis beta cyes gen so it leads to the formation of beta
carotin along with lopine so a substantial amount of lopine will get converted
into beta carotin so accordingly the color of tomato should change
into orange if it accumulates more and that is a indication that beta carotin
accumulates whereas uh whereas in case of antisense suppression where basically you are
blocking the step then what will happen that leads to more lopine so then how do you distinguish so if you take a o type
and the antisense Express Plant so the intensity of the red color will differ and from there uh it is possible
visually to check the consequence of this gene expression on tomato plants so Italian group was very successful uh in
in achieving their result and in fact the OV expression construct actually it produces orange or bright red
coloration of the fruit color okay and in case of antisense construction what happens that
slightly darker Hue H
in red fruit was noticed okay and the total koton content also enhanced so
I will I am basically not uh going to give you much of this content but uh yeah okay I can also produce for your
uh information see from the antisense construct uh from the OV expression construct so over expression construct
when we use so there what they found that the total carotenoid level reached up to 112
microgram per gam fresh weight uh whereas in the control was
only 66 whereas when antisense construct fruits
were measured so there the total carotenoid level is basically uh lower than that of the
control so it is it's about uh 97 microgram per gam uh as compared to the control
control is around 55 or so so and the work of the Italian group was also published in a very good
Journal that is called plan Journal so the Italian group work was published in the plant Journal again this is in
the same year 2000 volume 24 page number
413 to 419 so this is what is the Improvement of pro vitamin content by metabolic
engineering uh the first group actually they targeted uh the
bacterial carotin isomer which converts phyto into lopin but eventually they found more beta carotin but the second
group they played with the like beta Cycles one atemp they tried to block it and another one they try to overexpress
it and as a result they got the desired result so this is basically the outcome from the overe expression construct if
you see the color this is orange type and this is basically from the anti
sense okay so this is the real picture which was what was provided in the Jal so I
hope this is clear to you and with this I end this class thank you
The main strategies include overexpression and antisense suppression of key carotenoid biosynthesis genes such as zeaxanthin epoxidase (ZEP) in potatoes and lycopene beta-cyclase in tomatoes. These approaches modulate enzyme activity to redirect metabolic flux, enhancing accumulation of provitamin A carotenoids like zeaxanthin and beta-carotene.
Antisense suppression or overexpression of the ZEP gene unexpectedly caused co-suppression leading to near shutdown of ZEP activity. This resulted in a 4- to 130-fold increase in zeaxanthin accumulation and up to 5.7-fold increase in total carotenoids, while decreasing lutein levels. The suppression enhances the pathway flux toward zeaxanthin, raising provitamin A content.
The bacterial crtI gene introduces phytoene desaturase activity converting phytoene to lycopene, but endogenous lycopene beta-cyclase in tomatoes actively converts lycopene to beta-carotene. Thus, rather than lycopene accumulating, beta-carotene levels increase due to native enzyme activity downstream of the introduced gene.
Tissue-specific promoters ensure that gene expression is focused in relevant tissues such as fruit, enhancing desired metabolite accumulation without affecting other plant parts. Transit peptides target the engineered enzymes to plastids, the site of carotenoid biosynthesis, optimizing enzymatic efficiency and metabolic flux for improved carotenoid production.
Manipulation of carotenoid pathways can influence the metabolic precursors shared with vitamin E biosynthesis, such as geranylgeranyl pyrophosphate (GGPP). For example, in zeaxanthin-rich potatoes, increased metabolic flux toward carotenoids correlated with a 2- to 3-fold increase in alpha-tocopherol (vitamin E), demonstrating pathway interconnectivity.
Enhanced provitamin A content in staple crops like potato and tomato can address vitamin A deficiency in populations relying on these foods, improving eye health and immune function. Metabolic engineering enables the accumulation of specific carotenoids like beta-carotene and zeaxanthin at levels significantly higher than wild-type, yielding biofortified crops with added nutritional value.
Unexpected results such as gene co-suppression or higher-than-anticipated levels of downstream metabolites can occur due to complex endogenous enzyme activities and regulatory networks. For example, overexpression of ZEP or lycopene beta-cyclase genes sometimes led to suppressed enzyme activity or altered carotenoid profiles, highlighting the importance of understanding native metabolic context.
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